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For example using regedit check the registry entries at   - HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion\explorer\ShellIconOverlayIdentifiers

For example see below

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Remove the unneeded entries and restart and the sync icons should show back up. 
The ones you need are OverlayExtension, OverlayExtensionConflict and OverlayExtensionModified
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